Pattern Gene Database

Organisms Data Group
Arabidopsis thaliana
 
 
 
 
 
 
 
 
Bos taurus
 
 
 
 
 
 
 
Caenorhabditis elegans
 
 
 
 
 
 
 
 
Danio rerio
 
 
 
 
 
 
 
 
Drosophila melanogaster
 
 
 
 
 
 
Escherichia coli
 
 
 
 
 
 
 
 
Glycine max
 
 
 
 
 
 
 
 
Homo sapiens
 
 
 
 
Mus musculus
 
 
 
 
Rattus norvegicus
 
 
 
 
 
 
 
Saccharomyces cerevisiae
 
 
 
 

Tips: Click SP, HK, SE, RE to download the list of specific genes, housekeeping genes, selective genes and repressed genes, respectively.

Arabidopsis thaliana | development
SP HK SE RE
Dataset
PubMed ID
Title
GDS1757
16299223
Diurnal cycle effect in leaves: time course
Bos taurus | development
SP HK SE RE
Dataset
PubMed ID
Title
GDS1003
15560851
Embryogenesis and early fetal development: time course
Bos taurus | tissue
SP HK SE RE
Dataset
PubMed ID
Title
GDS205
14559974
Mammary tissue profile
Caenorhabditis elegans | development
SP HK SE RE
Dataset
PubMed ID
Title
GDS583
14730301
Aging time course, normal adult
Danio rerio | development
SP HK SE RE
Dataset
PubMed ID
Title
GDS1404
16205622
Regenerating retina: time course
GDS3623
20179605
Heart regeneration in zebrafish
Drosophila melanogaster | development
SP HK SE RE
Dataset
PubMed ID
Title
GDS1937
16421189
Early embryo development
GDS2673
16356271
Pupariation
GDS443
12852852
Midgut metamorphosis time course
Drosophila melanogaster | strain
SP HK SE RE
Dataset
PubMed ID
Title
GDS2981A
19021738
5 hour Embryos of various inbred lines: time course
GDS2981B
19021738
8 hour Embryos of various inbred lines: time course
GDS439
12907700
Intraspecific variation - Canton S (dye-swap)
GDS441
12907700
Intraspecific variation - Zimbabwe53 (dye-swap)
Drosophila melanogaster | tissue
SP HK SE RE
Dataset
PubMed ID
Title
GDS2784
17534367
Survey of various adult tissues
GDS444
12852852
Larval tissue-specific transcripts
Escherichia coli | proliferation
SP HK SE RE
Dataset
PubMed ID
Title
GDS2580
16626502
Recovery from stationary phase: time course (I)
GDS2584
16626502
Recovery from stationary phase: time course (II)
GDS2585
16626502
Recovery from stationary phase: time course (III)
GDS2586
16626502
Recovery from stationary phase: time course (IV)
GDS2587
16626502
Recovery from stationary phase: time course (V)
GDS2593
16626502
Wild type cells at various growth rates
Glycine max | tissue
SP HK SE RE
Dataset
PubMed ID
Title
GDS3235
---
Early maturation-stage seed compartments
GDS3239
---
Heart-stage seed compartments
GDS3241
---
Cotyledon-stage seed compartments
Homo sapiens | cell
SP HK SE RE
Dataset
PubMed ID
Title
BIOGPS_NCI60CELL
10700174
Cells of various types
BIOGPS_U133AGNF1HB
15075390
Cells of various types
GDS1402
---
Various normal pure cell cultures
GDS1835
15113400
Various cell lines and Universal Reference RNA (II)
GSE23316
---
ENCODE Caltech RNA-seq
GDS181_CELL
11904358
Large-scale analysis of the human transcriptome (HG-U95A)
Homo sapiens | development
SP HK SE RE
Dataset
PubMed ID
Title
GDS2052
16306079
Endometrium throughout the menstrual cycle
GDS2528
17170095
Basal plate of the placenta from midgestation to term (HG-U133A)
GDS2529
17170095
Basal plate of the placenta from midgestation to term (HG-U133B)
GDS707A
15190254
Aging brain: female frontal cortex expression profiles at various ages
GDS707B
15190254
Aging brain: male frontal cortex expression profiles at various ages
Homo sapiens | differentiation
SP HK SE RE
Dataset
PubMed ID
Title
GDS2039B
16618722
Endothelial cell tubulogenesis (HG-U133A)
GDS2040B
16618722
Endothelial cell tubulogenesis (HG-U133B)
GDS2429
17082649
Monocyte differentiation to macrophage and subsequent polarization (HG-U133A)
GDS2430
17082649
Monocyte differentiation to macrophage and subsequent polarization (HG-U133B)
GDS2431
16940433
Erythroid differentiation in vitro: time course
GDS785
15210650
CD4+ T cell differentiation (HG-133A)
GDS786
15210650
CD4+ T cell differentiation (HG-133B)
Homo sapiens | proliferation
SP HK SE RE
Dataset
PubMed ID
Title
GDS2039A
16618722
Endothelial cell proliferation (HG-U133A)
GDS2040A
16618722
Endothelial cell proliferation (HG-U133B)
Homo sapiens | tissue
SP HK SE RE
Dataset
PubMed ID
Title
BIOGPS_U133AGNF1HA
15075390
Tissues of various types
GDS1096
15950434
Normal tissues of various types
GDS181_TISSUE
11904358
Large-scale analysis of the human transcriptome (HG-U95A)
GSE30611
---
[E-MTAB-513] Illumina Human Body Map 2.0 Project
GDS3113
19014478
Various normal tissues
RNASEQ
22345621
RNA-Seq gene expression profiles of 15 tissues
Mus musculus | cell
SP HK SE RE
Dataset
PubMed ID
Title
BIOGPS_GNF1MB
15075390
Various mouse cells
BIOGPS_MOE430B
18442421
Various mouse cells
Mus musculus | development
SP HK SE RE
Dataset
PubMed ID
Title
BIOGPS_GNF1MC
15075390
Mouse embryo development
GDS2098
---
Testis development
GDS2203
---
Ovary development
GDS2577A
17227769
Developing embryonic liver
GDS2577B
17227769
Regenerating liver
GDS2719A
15496517
Embryonic testis development
GDS2719B
15496517
Embryonic ovary development
GDS2721
17486082
Pubertal mammary gland development
GDS2843
17338830
Mammary gland development
GDS2948
---
Pancreatic development (MG-U74A)
GDS2949
---
Pancreatic development (MG-U74B)
GDS2950
---
Pancreatic development (MG-U74C)
GDS2989
18388184
Small intestine postnatal development
GDS3447
11970905
Lung development (Mu11K-A)
GDS3448
11970905
Lung development (Mu11K-B)
GDS40
---
Cardiac development, maturation and aging
GDS401
14526100
Spermatogenesis time course (MG-U74A)
GDS409
14526100
Spermatogenesis time course (MG-U74B)
GDS410
14526100
Spermatogenesis time course (MG-U74C)
GDS605
15028632
Spermatogenesis and testis development time course (MG-U74A)
GDS606
15028632
Spermatogenesis and testis development time course (MG-U74B)
GDS607
15028632
Spermatogenesis and testis development time course (MG-U74C)
GDS660
15496517
Testis developmental time course: embryonic (MG-U74A)
GDS661
15496517
Testis developmental time course: embryonic (MG-U74B)
GDS662
15496517
Testis developmental time course: embryonic (MG-U74C)
GDS663
15496517
Ovary developmental time course: embryonic (MG-U74A)
GDS665
15496517
Ovary developmental time course: embryonic (MG-U74B)
GDS666
15496517
Ovary developmental time course: embryonic (MG-U74C)
GDS912
15520371
Hair follicle development: time course
Mus musculus | differentiation
SP HK SE RE
Dataset
PubMed ID
Title
GDS45
12097346
Cochlear hair cell line differentiation time course (Mu11K-A)
GDS51
12097346
Cochlear hair cell line differentiation time course (Mu11K-B)
GDS578
14723852
Preimplantation development
GDS812
15282163
Preimplantation embryo development (MG-U74A)
GDS813
15282163
Preimplantation embryo development (MOE430A)
GDS814
15282163
Preimplantation embryo development (MOE430B)
GDS1265
16168984
Oocyte development (MOE430A)
GDS1266
16168984
Oocyte development (MOE430B)
GDS1865
16135533
Chondrocyte differentiation: time course
GDS2659
17276354
Adipogenesis in vitro (Mu11K-A)
GDS2660
17276354
Adipogenesis in vitro (Mu11K-B)
GDS2666
17394647
Embryonic R1 stem cell differentiation in vitro (MG-430A)
GDS2667
17394647
Embryonic R1 stem cell differentiation in vitro (MG-430B)
GDS2668
17394647
Embryonic J1 stem cell differentiation in vitro (MG-430A)
GDS2669
17394647
Embryonic J1 stem cell differentiation in vitro (MG-430B)
GDS2671
17394647
Embryonic V6.5 stem cell differentiation in vitro (MG-430A)
GDS2672
17394647
Embryonic V6.5 stem cell differentiation in vitro (MG-430B)
GDS568
15297311
Erythroid differentiation: G1E model
GDS586
14688207
Myogenic differentiation timecourse (MG-U74A)
Mus musculus | strain
SP HK SE RE
Dataset
PubMed ID
Title
GDS1406A
16244648
Bed nucleus of the stria terminalis of various inbred strains
GDS1406B
16244648
Hippocampus of various inbred strains
GDS1406C
16244648
Hypothalamus of various inbred strains
GDS1406D
16244648
Amygdala of various inbred strains
GDS1406E
16244648
Pituitary gland of various inbred strains
GDS1406F
16244648
Cingulate cortex of various inbred strains
GDS1406H
16244648
Periaqueductal gray of various inbred strains
GDS1490A
16002470
Heart of various inbred strains
GDS1490B
16002470
Kidney of various inbred strains
GDS1490C
16002470
Liver of various inbred strains
GDS1490D
16002470
Muscle of various inbred strains
GDS1490E
16002470
Spleen of various inbred strains
GDS1490F
16002470
Testis of various inbred strains
GDS1490G
16002470
Thymus of various inbred strains
GDS1490H
16002470
White Adipose Tissue of various inbred strains
GDS1490I
16002470
Adrenal gland of various inbred strains
GDS1490J
16002470
Brown Adipose Tissue of various inbred strains
GDS2226
15128411
Hippocampus of various inbred strains
GDS2917A
17324278
Bed nucleus of the stria terminalis of several inbred strains
GDS2917B
17324278
Hippocampus of several inbred strains
GDS2917C
17324278
Hypothalamus of several inbred strains
GDS2917D
17324278
Pituitary gland of several inbred strains
GDS2917E
17324278
Periaqueductal gray of several inbred strains
Mus musculus | tissue
SP HK SE RE
Dataset
PubMed ID
Title
BIOGPS_GNF1MA
15075390
Various mouse tissues
BIOGPS_MOE430A
18442421
Various mouse tissues
GDS182
11904358
Large-scale analysis of the mouse transcriptome (MG-U74A)
GDS3052
---
Various normal tissues
GDS3142
18365009
Various tissues
Rattus norvegicus | development
SP HK SE RE
Dataset
PubMed ID
Title
GDS621A
15138310
Hindlimb muscle development
GDS621B
15138310
Extraocular muscle development
Rattus norvegicus | tissue
SP HK SE RE
Dataset
PubMed ID
Title
GDS589
15060018
Multiple normal tissue gene expression across strains
Saccharomyces cerevisiae | cell cycle
SP HK SE RE
Dataset
PubMed ID
Title
E_TABM_915A
21149693
SK1 strain MATa cells across two cell cycles
GDS2347
12464633
Wild type strain across two cell cycles (I)
GDS39
9843569
Cell cycle, elutriation time course
Saccharomyces cerevisiae | condition
SP HK SE RE
Dataset
PubMed ID
Title
E_TABM_590
19169243
Transcription profiling of wild type yeast grown with ethanol, glucose and galactose and the deletion mutant of Rrp6
Saccharomyces cerevisiae | development
SP HK SE RE
Dataset
PubMed ID
Title
E_TABM_915B
21149693
Transcription profiling of S. cerevisiae in different meiosis stages
GDS104
9784122
Sporulation time course
Saccharomyces cerevisiae | others
SP HK SE RE
Dataset
PubMed ID
Title
GDS2267
16254148
Metabolic cycle: time course
GDS3332
18215224
Wine fermentation effect on yeast: time course
GDS37
9381177
Diauxic shift time course
Saccharomyces cerevisiae | proliferation
SP HK SE RE
Dataset
PubMed ID
Title
GDS18
11102521
Stationary phase time course (y12)
GDS283A
12740579
Stationary phase, wide type
GDS283B
12740579
Stationary phase, ypl230w mutant