About PaGeFinder |
Pattern Gene Finder (PaGeFinder) is a free on-line server to provide interactive pattern analysis of user-submitted gene expression profiles generated by high throughput technologies, e.g. microarray, RNA-seq, SAGE. PaGeFinder implements new algorithms and functions for quantitative identification of pattern genes like specific/selective genes, housekeeping genes and repressed genes. PaGeFinder is particularly useful for dynamic analysis of serial transcriptomic data under different spatiotemporal conditions (tissues, developmental stages, physiological states, etc). It would be also useful in comparing gene expression profiles from the same platform or even different platforms.
Citation: : Pan, J.B., Hu, S.C., Wang, H., Zou, Q. and Ji, Z.L. (2012) PaGeFinder: quantitative identification of spatiotemporal pattern genes. Bioinformatics, 28, 1544-1545. [html]
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Pattern Gene Search |
Similarity / Correlation Analysis |
Useful Links |
TiSGeD - a database for quantitative identification of tissue-specific gene.
GEO - a gene expression/molecular abundance repository supporting MIAME compliant data submissions.
ArrayExpress - a public archive for functional genomics data compliant with MIAME- and MINSEQE requirements in accordance with compliant data in accordance with MGED recommendations.
BioGPS - a gene portal of gene expression and annotation.
TiGER - a database for tissue-specific gene expression and regulation.
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